Saturday, 31 October 2009

Wordle

Now this is pretty cool ...


It's a kind-of cloud generated from the content of Strange News using an online Java package called Wordle. I particularly like that it displays "Arse" prominently - didn't notice that I'd used it that much. Although I've fed it this blog, it can be fed any large block of text. Here's what happens when you give it the entire text of Moby-Dick (for APM, of course) ...


Marvellous. Given that it identifies major themes in the text it's fed (cf. "Whale" above), perhaps it's a quick way to generate a short-hand summary of a technical paper or long newspaper article? :-)

Return of the Wanderer

For someone as poorly observant as me, it's difficult to know for sure, but I'm pretty sure that this year's successful seagull (last blogged here and photographed here) is currently hopping around its birthplace on the roof opposite (I'm in work wrapping up a review for the NSF). The gull, which still has juvenile plumage, arrived with an adult, possibly its parent. I don't know how gull families work, but they're a veritable model of the nuclear family compared to the dysfunctional ducks. Anyway, wearing my anthropomorphic hat, I suspect that animals as big and seemingly clever as gulls are probably smart enough and interested enough to recognise and return to places that once were important to them. So, who knows? It could be them.

Monday, 19 October 2009

The naturalness of age

We caught an excellent exhibition at the Civic Centre yesterday. The BP Portrait Award 2009 is on tour, and is spending a month and a half in Southampton.

While the subjects range widely, taking in everyone from children to heavily tattooed Portsmouth supporters, painting the elderly was quite a popular choice. Some of the pictures were really striking, and the material accompanying such painting usually made vague references to the naturalness of the ageing process or the cycle of life or some such.

Seeing such commentary repeatedly made me reflect on, not so much how natural ageing is, but how natural our acceptance of it is. In part, this sometimes strikes me as being a reflexive dismissal of efforts to ward off ageing and a dislike of the denial of age by those of a more materialist (in the social sense) disposition. All well and good, but as a biologist I can't help but think that ageing, far from being something that we should relax into, is something that we really should resist.

Rather than seeing it as a necessary part of life, senescence should instead be seen for what it is: a predictable outcome for the throwaway machines that are built to service the unconscious and uncaring needs of immortal strands of digital information. If we value ourselves, that is our minds, above the ceaselessly shuffled genes that built the machines that we both are and occupy, then we should take a far less sanguine view of our fate.

In a way, ageing truly exposes our serf-like existence as mere temporary vessels for more permanent passengers. Once they have disembarked, off to newer, cleaner vessels for the next leg to eternity, the fate of the decaying hulks left behind is irrelevant, and the concomitant blindness of natural selection is to be expected. In this view, we should be more than a little annoyed by senescence, and a whole lot more questioning of the common wisdom that, just because something is natural, it should be uncritically accepted.

The shallow pursuit of youth should be viewed suspiciously, but it is wrong to view ageing as some benign part of some abstract "cycle of life". What ageing is really telling us, if we're prepared to listen, is "you're fired".

Sunday, 18 October 2009

More drinking in Eastleigh

Further to last month's evening in Eastleigh, last night saw another, albeit more refined, quaffing-session in the town. This time it was a wine-tasting evening - at least that's the formal excuse. Last time's winner, Dan, was both defending the Golden Arse and co-hosting the evening with Rachel. Unfortunately, as has occurred time and time again, he was unable to retain the Arse, which went to repeat-winner June ...

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While June won with an impressive score of 15/18, I trickled in way down the table with a paltry 7/18 points. And, even then, some of those I only got because I played the numbers game and guessed the same wine multiple times. Though I have won the Arse in the distant past (and on my first tasting evening to boot!), my performance in the last few evenings has left a lot to be desired. I think I'll be taking tips from June next time though (and/or copying off of her sheet).

Wednesday, 14 October 2009

Carbon cooperation

Another very interesting seminar today. This one, by David Beerling from Sheffield, dealt with the geological cycle of carbon (weathering; CaCO3 burial; vulcanism) and the role that terrestrial vegetation plays on top of it.

Essentially, for a couple of decades it's been known that there's a neat feedback loop between CO2 and climate, which is mediated through rock weathering on land. Vegetation on land is known to be associated with enhanced weathering, and the evolution of land plants (first in getting onto the land; later the advent of the angiosperms) is believed to be responsible for two significant decreases in atmospheric CO2 in the Phanerozoic.

This was the background to the talk, but it went off in quite a different direction. Beerling then introduced the arbuscular mycorrhiza (AM) and the ectomycorrhiza (EM), two groups of fungi with strong mutual symbioses with land plants. While I knew that these played an important role in nutrient acquisition for some plants, I'd no idea quite how big a role this was. Apparently around 12% of photosynthate produced by a plant can be channelled to its symbiont.

The seminar then delved into some experimental work in which the strength of this relationship was examined (largely through 14C-labelling of plant photosynthate). This was augmented by some very elegant and clever growth experiments in which the potting medium was differentially composed of soils of different mineral value. These trials showed not only the strong link between the two species, but also how tenacious fungi are at locating and "mining" minerals for their plant partners. Some of the photographs showing the fungal growth were really impressive on this point.

Finally, the talk returned to the geological cycle of carbon, and armed with this new quantitative knowledge about the plant-fungus relationship, suggested instead that the underlying factor in the downward "jumps" in past atmospheric CO2 was the evolution of the two groups of fungi. Fossil evidence points (as much as it can given large uncertainties) to the appearance of each group around the time that CO2 drops.

Anyway, it was all quite a nice challenge to the "interesting-but-not-significant" view I'd formed of AM and EM during my biology degree. And intriguing to see cooperation, which I also typically view as "interesting-but-not-significant", put pole position in such key biogeochemical processes.

Sunday, 11 October 2009

Evil corporates

Judging from this weekend's films, anti-corporatism is still in vogue, and still makes for enjoyable cinema (which may say more about me than Hollywood).

First up was State of Play, a remake of an excellent TV series we saw a couple of years ago. Somewhat surprisingly, the film largely mirrors the original, albeit with a few nips and tucks. The core story is retained, though some of the plotting is rather fast, and we don't get to know some of the characters quite so well. This does tend to move things along a little too quickly for the viewer to try to guess ahead, surely one of the pleasures of the genre, but it was still an enjoyable film. The story's central messages about the corrupting influence of the bottom line and the creeping corporatisation of military services are retained, and still timely, although as with the TV series, get overshadowed as the narrative twists its way to the finish line.

Much more interesting, and viscerally enjoyable, was District 9, an ostensibly science fiction film about alien visitors to Earth who have overstayed their welcome. Told as a mixture of conventional cinematic narrative and through interspersed documentary footage and interviews, the film follows Wikus, an administrator tasked by Multinational United (MNU) to evict the aliens from their Johannesburg (and eponymous) slum. However, while serving eviction notices to the brutalised aliens, Wikus is accidentally exposed to an alien technology and begins to undergo a genetic transformation that gradually turns him into an alien. This transformation is of great interest to MNU, who have long been searching for a means to successfully operate alien weaponry, and Wikus quickly becomes an expendable resource for the corporation's biotechnology department. Escaping from MNU, Wikus becomes a hunted fugative, and while desperate to return to normal life and his loving wife, he gradually becomes aware of the true plight of the aliens. Ultimately, he selflessly helps one alien and his son to escape to, and activate, the mothership that has hovered unresponsively over the city for 20 years.

While the film is solidly enjoyable as a science fiction romp, particularly when Wikus begins to use alien technology to fight back against MNU, its real themes run very close to the surface. In this respect, setting the film in post-Apartheid South Africa is something of a master-stroke, one that harmonises perfectly with the anti-racist subtext (practically the sur-text). The film did strike me as channelling the spirits of Robocop and Alien Nation, but by marrying the best themes from both (together with the rather enjoyable violence of the former) more than stands on its own two feet. And, as ever, it's hard not to like a film which ends hopefully.

Saturday, 10 October 2009

Not so autotrophic now

We had an interesting inaugural seminar in yesterday's Friday Seminar Series. MVZ was in the barrel, as was I, since I was on introducing duty through my new membership of the Series' organising committee. He gave a quite revelatory (and impressively brief) overview of some work he's done on less-than-autotrophic behaviour of phytoplankton. After starting with an introduction that took in the evolutionary history of prokaryotes and the endosymbiosis that led them to eukaryotes, we jumped to a conundrum in the nutrient and carbon budgets in the modern North Atlantic. Basically, eukaryotic algae are doing a fair fraction of the carbon fixation, but are only responsible for a small fraction of phosphate uptake. Given that there should be parity between these, something is up. Bactivory, apparently, is what that "something" turns out to be. By carefully labelling prokaryotic cells by providing them with an isotope-labelled amino acid, MVZ was able to show that, within hours, this label wound up in some interesting places. Even card-carrying autotrophs like the coccolithophorids have a sideline in getting phosphate in a less-than-first-principles manner. The idea is that, in highly nutrient stressed environments like the oligotrophic gyres, bacteria provide an excellent source of phosphate, and other useful molecules to boot. That said, my favourite phytoplankton, the diatoms, are still hardcore-autotrophs, with no whiff of bactivory on their part (at least in the open ocean), but this probably stems from their adaptation to high nutrient environments (plus their frustules would probably impede dining). In the environments that MVZ studied, it turns out that eukaryotic phytoplankton are as important at grazing bacteria as bona fide protistan microzooplankton. Quite a turn up for the books [*], although pleasing to see that, despite billions of years of autotrophic life, the eukaryotes are hanging on to their phagotrophic machinery ... just in case.



[*] Actually, as MVZ pointed out, people have known for a long time (probably for almost as long as they've known about microplankton) that eukaryotic phytoplankton engage in grazing activity. What's new here is that the scale of this has been established. I certainly wouldn't have expected algae to be such enthusiastic players in the grazing business. It's definitely something for future generations of ecosystem models ...

Friday, 2 October 2009

Day 6, drivearound

Rather than exhaust ourselves on another walk on our last day on holiday, we decided to go on a drive around several places that we had on our list but which we never got around to visiting. Any future trip out this way, not unlikely given how successful this trip has been, might take some of these in more closely.

Day 6, drive around

Our first stop was Goudhurst, a village on top of a little hill. Definitely something of a nice stop for a hike, but a little empty for us in culture-vulture mode. As with many of the East Sussex / Kent villages, it has a great church bang in the centre of town. Although this, and the town in general, was under siege from Jehovah's Witnesses while we were visiting, we had a good look around and in it ...

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Next up was Lamberhurst, actually immediately to the north of Bewl Water. We didn't stop in the village itself, but instead dropped by its church ...

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After an abortive trip to Scotney Castle, a nearby, but dull-looking National Trust site, we then headed back east to Cranbrook, a much larger village that afforded lunch and another church visit. This time the church was all decked out in its harvest festival finest, as can be seen in the scattering of apples and adornments to the baptismal font here ...

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Cranbrook also sports a great windmill near its centre. It's essentially a museum these days (one that was shut when we visited), but I believe that it's still functional when it wants to be ...

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Our final stop for the day was at a nearby vineyard. We had a quick look around the vines (which were being picked while we were there), before exploiting its shop as a source of birthday / holiday presents. Rather nicely, we also got to sample a few whites, a red and a rose that they produce. The whites were very nice, but the red wasn't as full-bodied as we're used to - possibly on account of more limited growing conditions for red grapes.

Full set of drivearound photographs available here.

On returning to Burwash, we chilled out to make the most of another beautiful sunny day, before getting ourselves ready for the trip back to Southampton. Burwash has been a great holiday venue, particularly because of the barn itself. Needless to say, a round of holiday home snaps resulted.

Full set of barn photographs available here.

Thursday, 1 October 2009

Day 5, Bewl Water

Looking around for a walk to do, we spotted nearby Bewl Water. It's another reservoir, much like Darwell Reservoir on our Brightling walk, but has an activity centre and a full round-lake path.

After ruling out cycling around the path on grounds of prohibitive cost (you'd think such an operation might drop its prices off-season), we decided to just walk out one edge of the lake then back, and then to try our luck elsewhere. But easy walking, nice views of oast houses over water and an impressive (early) average walking speed (3.5 mph), persuaded us to do all 20 km (12.4 mi) ...

Day 5 Bewl Water hike

As mentioned above, one of the attractions for us, and one of the reasons that it mutated from a 3-mile round trip into the full 12 miles, was because it had no shortage of attractive views of the aforementioned oast houses. And because, as the track picture above shows, the path wriggled its way around the lake, we often got multiple views of these. This one we saw from far and near ...

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Actually, there isn't a huge amount more to say about the walk. The path was, with a few roadwork-related hiccups, extremely easy to follow. And the weather was, again, excellent. So it was a enjoyable and straightforward walk around a rather inlet-heavy, but pretty, lake ...

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... At least for the first 10 km! The second 10 km, while still very easy walking, gradually became more of a chore. But the walk did give us something of a sense of achievement since it's the longest one-day walk we've done for quite a while. Some days we've come quite close in length when summed up over the full day, but this is the longest formal route we've walked in years (and it isn't even all that long!).

Anyway, it was very pleasant to return to the activity centre and claim our coffees. It was also surprising to find that, including a lunch stop, we'd managed to maintain an impressive (for us) average speed of 3.1 mph. Admittedly, the path, being around a lake, was largely flat walking, but this is still a good speed for our walks (our moving average even stuck at 3.5 mph).

The evening's entertainment this time was the glossy, nonsense techno-thriller Swordfish, another hauled from the barn's large DVD library. Unlike Mystery Alaska, which somewhat surprised us as a minor success, this time we got more-or-less what we expected. Its saving grace was that its running time was sub-100 minutes, so it only just outstayed its welcome.

Full set of photographs available here.

Wednesday, 30 September 2009

Day 4, Rye and atomic Dungeness

We travelled a bit further out today, down to the southeast and the coastline around Rye and the Dungeness. We began with an easy hike around an SSSI adjacent to Rye Harbour ...

Day 4 Rye Harbour

The walk took us on an almost triangular route around a protected coastal ecosystem. The foreshore was a large shingle beach, almost certainly formed by longshore drift, and clearly still on the move judging from the dilapidated groynes all along it ...

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The shingle was home to a rather strange cabbage-like plant that formed irregular sparse coverage. The plants were a little desert-like in their distribution, but I couldn't think of what might be limiting them and causing this pattern. Though the SSSI was ostensibly home to a range of rare and protected species (which were nicely illustrated by mosaics), we didn't really come across much obvious wildlife. We did see more goats again, however.

Much more obvious, though distant, were two sources of power generation on the coastline. Just south of Rye we could see a large array of wind turbines, although they weren't up to much as our visit coincided with slack winds. Further off in the distance was a series of rectangular buildings that related to an altogether different carbon-free technology ...

After completing our walk (7.4 km; 4.6 mi) we headed up to the town of Rye itself. It's a nice little maze of cobbled and car-hostile streets where, somewhat to our surprise, the novelist Henry James once lived. Though small, it has its own little castle (complete with balls) and a large and well-provisioned church. After grabbing lunch at a little collective supporting adults with learning difficulties, we did a bit of exploring ...

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We then headed out towards Dungeness, stopping off along the way for a closer peak at the first of the area's non-fossil fuel power sources ...

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Arriving at the rather desolately beautiful Dungeness headland, our first stop was Prospect Cottage ...

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This is a "cottage garden" created by the film-maker and artist Derek Jarman. Being located in the alien environment of Dungeness and rising out of the shingle there, the garden is a rather bizarre version of the rural idyll beloved of chocolate boxes (and one well-provisioned with the "sea cabbages" already mentioned). I'm guessing that's what Jarman was after when he originally created it. Well, that and locating his homage to cosy English living in the evocative and seemingly threatening shadow of Dungeness nuclear power station ...

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This is the first nuclear power station that I've gotten up close to, and the setting certainly helped amp up the atmosphere. Firstly, the desolate shingle gives the area the air of a science fiction world, helped when we visited by its framing with a grey sky and sea. Secondly, the area is populated either by small cottages surrounded by junk, or simply by large piles of seeming marine debris, including beached boats and battered shipping containers. These pile on the futurism by giving Dungeness an end-of-the-world feel that wouldn't be out of place in Half-Life 2.

Surprisingly, but at the same time not surprisingly, the area is host to a small community of artists, of which Jarman was once part (he may even have been in the vanguard, but I suspect not). While investigating the displayed works of one painter (Paddy Hamilton, we later discovered), we were invited into his studio and got the low-down on his work and inspiration. One of his series of paintings was of the vehicles that visited Dungeness. It transpired that these belong to a population of transients attracted to the cheap living and isolation of the headland. The paintings themselves were interesting, but the stories behind each gave them an unexpected depth.

All that said, the power station is a pretty anodyne feature. While we were wandering around there was essentially no discernible activity or noise from the station. Quite different from the industrial landscapes around my work, which are always busy or noisy or both. In fact, what activity there was stemmed from the fair number of curious visitors who'd travelled to the tip of the headland to see the reactor buildings. Perhaps because they didn't glow, but just invisibly and silently produced power, people tended not to stay very long, and neither did we. A flurry of photographs, and we headed back inland to Burwash.

Full set of photographs available here.

Tuesday, 29 September 2009

Day 3, Brightling and Bexhill

Two main targets today: a walk based around the neighbouring village Brightling, and a trip to see the De La Warr Pavilion in the seaside town of Bexhill-on-Sea.

Day 3 Brightling hike

We picked the Brightling walk from one of our books because it took in a number of follies built by the local 18th century eccentric John ("Mad Jack") Fuller. As his nickname implies, Fuller was regarded by some as a few sandwiches short of a picnic, but he was something of a rebellious MP and a strong patron of the arts and sciences, of which he supported, among others, J.M.W. Turner and Michael Faraday.

Anyway, our hike began at Brightling church, in the graveyard of which is a Fuller's final resting place, a large pyramid mausoleum ...

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The walk went on to take in two further follies belonging to Fuller, a temple folly that now forms the centrepiece of a sheep pasture, and a tower folly that can still be scaled for views of Brightling and its surrounds ...

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Again, the weather was very much on our side, and the walk took us over fields and through woods, passing goat farms and even crossing (twice) a rumbling, covered conveyor belt snaking its way through Brightling's rolling landscape ...

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We could hear this gently grumbling through the forest long before we could see it. Apparently, it serves a neighbourhood gypsum mine. It certainly provided a more industrial feature of interest to counterpoint the more classical follies of Fuller.

Eventually (9.9 km; 6.2 mi), the work circled back on itself and brought us back to Brightling's church and Fuller's pyramid. Although the graveyard was providing dining for some local sheep (which now appears a common management strategy in East Sussex), the total absence of a bench (I know, I know) forced us to look a bit further afield for a lunch spot.

Fortunately, our route to Bexhill-on-Sea took us through a number of small villages and we eventually found the lovely St. Lawrence Church on a hill in Catsfield ...

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It wasn't the first church that we stopped at though - but it was the first one that hadn't been deconsecrated and turned into someone's home. C had got as far as sitting down and getting the sandwiches out before we spotted that our first church's "graveyard" was lacking in headstones but did have a washing line ... oops.

After lunch we headed down to the seafront at Bexhill-on-Sea, and visited (probably) the town's most famous attraction: the beautifully Art Deco De La Warr Pavilion ...

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C had been wanting to visit this for years but we'd never quite made it far enough east (the A27 being pants). Although I like Art Deco, I've often found that famous buildings I've gone out of my way to find are somewhat disappointing when finally encountered in the flesh, so I wasn't in a huge rush to see the Pavilion. But I must admit that I was pretty impressed in the end. As well as being uber-stylish - with a cylindrical glass front that houses a spiral staircase and some dangling modernist sculpture - its recent refit has given it a real polish. We actually caught it inbetween exhibitions, but just as well really - the building was cool enough to justify wandering around it without trying to take in any art on top.

Unfortunately, Bexhill-on-Sea doesn't have a whole lot else to see (or, rather, nothing that we could see), so we headed for home after finishing our photoshoot of the Pavilion. On the way back we hit another church, Mountfield. Among other details, this had a great Millennium Window with a lovely modern detail ...

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Full set of photographs available here.

Monday, 28 September 2009

Day 2, Battle and Bodiam

East Sussex is probably best known in the Britain for its connection with the Battle of Hastings in 1066. This year is probably the most significant, well, memorable, date in British history ... for reasons that (me being from Scotland) are largely mysterious. Today's hike was centred on the town that now exists adjacent to the battle site, the appropriately-named Battle, and took us to Battle Abbey, a memorial to the battle built by the winning side. I'm still not entirely sure why this particular battle is such a tectonic shift in British history (hadn't we been conquered by the Romans previously? aren't we currently "ruled" by an alien royalty?), but I can at least say that I've walked all around the hillside on which the battle took place.

Day 2 Battle walk

We started bang in the centre of Battle but got out of the town in fairly short order, heading northeast. This time the GPS unit had remembered out track so, with a few minor deviations, we stayed close to the plan. This was helped by rather obvious path markers like this one ...

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After a short deviation immediately after this railway tunnel, essentially we walked the wrong way around a sewage farm, the walk was pretty uneventful. A long stretch of it was through the bottom end of some impressively large gardens attached to equally impressively large houses, much, I'm sure, to the displeasure of their clearly moneyed owners. The outgoing leg, to a small village called Sedlescombe, took us mostly through fields, while the return leg was a largely forested affair. Quite a long walk (16.6 km; 10.3 mi), but cloudy weather kept it comfortable.

Eventually, we circled back to Battle ...

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The town is pretty much dominated by the abbey built to commemorate the battle, and though we'd already walked quite far, we figured that we couldn't possibly visit the town without doing the history.

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It turned out to be a lot more interesting than I'd originally feared. After a short film setting the scene, we took a walk around the battle site guided by a surprisingly entertaining audioguide.

Usually I'm extremely skeptical of these devices because they turn art gallery visitors into inconsiderate view blockers, but here there was no risk of that, and the commentary was well-written and actually quite amusing in places. For instance, after introducing an impressive, if tumbledown, portion of the abbey, the speaker delighted in undercutting our perceptions by revealing it as the toilet block.

And though even the geography of the site has changed somewhat since the battle, keying the commentary to particular locations still gave the listener an idea of where key events took place. The key event, of course, was the felling of King Harold, ostensibly by an arrow to the eye, an event we couldn't resist replicating on the very site where Harold (allegedly) fell ...

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After leaving Battle we headed home by way of a couple of stops. We caught a really nice church in Salehurst with what we thought was a novel solution to graveyard lawn maintenance ...

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Our last stop was nearby Bodiam Castle, something of a total castle stereotype. Not content with classic turrets and slit-like windows for shooting arrows out of, it's also surrounded by a (duck-infested) moat crossed by a drawbridge. Still, it made for a photogenic end to our day out.

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Full set of photographs available here.

Sunday, 27 September 2009

Day 1, Burwash botch

Today's jaunt (10.7 km; 6.6 miles) took us on a quasi-circular walk that actually began at our holiday home's front door ... at least, that was the plan.

Day 1 Burwash walk

After heading out southeast from Burwash, the walk's first point of interest was Bateman's, home of the British writer Rudyard Kipling for a good part of the early 20th century ...

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So far, so good. Unfortunately, things went a bit awry after this point. Although I'd programmed the walk's route into the GPS, a memory problem meant that it had vanished by the time we started out. This shouldn't have been a problem given that we had a walk description and a map of the route. However, shortly after Bateman's a mistake interpreting said description set us on the wrong path. Unfortunately, though we were very much on the wrong path (as shown here), we were still able to stretch our book's instructions to match our surroundings. This seems to be something that we excel at, and our contortions to (mis)match words with what we see around us can be pretty impressive.

After about 15 minutes, we finally clocked our mistake, by which point we were the best part of a mile from its genesis. Reasoning that we could use our map to correct for mistake number one, we dutifully trudged onwards and into making mistake number two. Actually, we did get ourselves briefly onto the right path, but somehow managed to overshoot it. After winding up in an unexpected field, we despaired and thought about tracing our steps, but gave the walk one final chance to come good (it was a close thing). This time our luck was in, and after clambering over some barbed wire fencing, we got ourselves back on track.

In the end, the walk was actually a rather nice fields and forests affair, and with the weather so good it was easy to be forgiving of our mistakes. Aside from Bateman's, which a final late mistake saw us accidentally gatecrashing without paying, it was really just a nice jaunt in the English countryside. It did bag us our first oast house though ...

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After recovering from our unexpectedly extended walk, we had a look around Burwash itself. It's more-or-less a one street town, with a just few short lanes padding it out. As is pretty much de rigueur for English villages, it had a great church in it, so there was much photographing of stained glass windows ...

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After the previous evening's vegetarian-stretching dinner on the town, we opted to try out the barn's self-catering facilities. We also raided its video library for the evening's entertainment. Unfortunately, we'd seen almost everything worth watching, so against our better judgement plumped for an unknown Russell Crowe vehicle dealing with an ice hockey team from the polar wastes of Mystery Alaska. But, much to our surprise, it was actually perfectly acceptable entertainment. Totally generic, but very capably done. And served well by a good heart and some choice profanity.

Full set of photographs available here.

Burwash Barn

As of late yesterday, we're on holiday in Burwash, East Sussex, another of our 2009 staycations. Previously we've done Scotland and Wales, but this is the English leg of our UK travels this year.

Anyway, so far so good. The place we're staying, a converted barn, is fantastic. As well as being really attractive, the owners have kitted it out with virtually everything you'd need. To use a cliche, it's practically a home from home. We've even got wi-fi, and we arrived to find a cake waiting for us.

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As we arrived relatively late in the day, we didn't have much time last night for anything other than a nice chat with the owner and a trip to the nearly adjacent pub, the Rose And Crown, for dinner. Which, in passing, was really quite good, despite the traditional lack of vegetarian options (well, I say that having had the "trio of sausages" dish). Getting back to the barn, I noticed the disconcertingly low light-pollution, so tried to take a star trails photograph, with mixed results ...

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The air was rather damp last night, so as time passed, the lens got more and more condensation, with the result that only one really bright star was visible throughout the whole exposure period. Still the gradually fading trails work quite well.

Up early this morning to try for a local hike. Unsurprisingly given last night's condensation, dawn was nice and misty, especially in the valley below us. So out came the camera again. Here are our neighbours at the bottom of the garden, complete with a view over the sea of fog ...

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Thursday, 24 September 2009

Ducks and Suppression

It's been a while since I reported on the ducks, but as I'm off on holiday next week, an update's in order.

Despite their advanced state of development, they've still not made the slightest foray off the ground and are still waddling around the quad. As of today, there are seven "ducklings". Five remain from the original batch of survivors, and they're indistinguishable from adults now. And there are two from the later batch; while they still have a bit of duckling in their feathering, they also look just like adults to a first glance.

But there's been more duck news this week.

The quad is due to be re-landscaped during the winter, and one of the future developments will be a proper pond. However, furious debate has arisen about whether the ducks will continue to be fed in the future. Although attrition is particularly high in the quad (less severe this year than last), year-on-year the number of ducks that returns to breed is rising. So there's been heavy discussion between "stakeholders" (estates, duck-feeders, duck-lovers) about the pros and cons of continually incrementing the quad's population. My contribution to this discussion has been to point out that, even with feeding, duck mortality is pretty high, apparently through inter-brood competition (= murder by competing mother ducks). Anyway, it's now been decided that the ducks won't be fed in future years, so that their numbers can equilibriate (Malthus-style) to the quad's unassisted carrying capacity. But, in order to avoid drawing attention to future duck famines (and their attendant PR disasters), I've been instructed not to report duck activity on our local e-mail distribution list, nor send around pictures of cute ducklings.

As I basically concur with the no-feeding decision, I'll be going along with this strategy. It'll be interesting to see how long the news blackout can hold - a lot of offices look down into the quad ...

Wednesday, 23 September 2009

Personally sacred

I got a really special item today courtesy of APM. Until last year, he shared an office with Mike Fasham, but just this week he's moved to a new one. As part of the move, he's been sorting through and organising Mike's remaining papers and books at NOCS. Through of the generosity of Mike's family, some of us have been lucky to acquire some of the scientific reprints and texts from his library (including a copy of the oceanographic bible, Tracers in the Sea). Thanks to careful sifting by APM, I've now got a copy of one of Mike's first scientific papers, originally published way back in the year that I was born. But today I got something even more special.

Way back in the mists of time, I wrote my PhD thesis based almost entirely around the description, in a review chapter, of a plankton model that Mike once wrote (Modelling the marine biota, 1993). Anyway, today APM found me a near-final draft of the chapter, complete with comments from both Mike and one of his colleagues. It's a really significant item for me, being both a connection to Mike and to my earliest, and most significant, introduction to plankton modelling. It's just great.

Monday, 21 September 2009

Paper anniversary

It's the second anniversary of Strange News From The Plankton! So a second opportunity to reflect on the success or otherwise of this project. First up, this year has been slightly more successful in numbers of posts, up from 120 to 135. And this increase has been achieved despite a decline in the number of duck posts, down from 42 to 18 in spite of a more robust quad population. The balance between fiction and science fiction has also tipped in a more positive direction, although only if I lump the crime genre in with more literary reads. Still, I think I'm dodging the pulpier end of this most popular of genres for now. Another plus point has been a bit of an increase in the science content, with even a couple of items on the planktonic side. Still, given it's my job, I could probably do a lot better. And I was quite pleased that I managed to sort out at least one holiday blog this year - we're off to East Sussex / Kent next week, so I'll have another opportunity to try my hand at that. On the downside, despite my protestations last year, there's still very little sign of any of the cleverer content I occasionally think about but never write (cf. the manifesto). My idea of a "How did I get here?" series is still very much confined to my head, while I've not properly formulated any ideas for more formalised projects (well, at least ones that are plausible enough to share). Still, as ever, there's always time. Strange News can continue for now.

Saturday, 19 September 2009

Revolution Management 101

After missing it during an annoyingly short run at the cinema, we finally caught the second part of Steven Soderbergh's biographical film Che, about the eponymous Argentinian revolutionary. It provides an solid counterpart to "Part 1" (which we saw a couple of months ago), and its contrasting story paints a diptych of revolutionary case studies, the first a tale of success, the second a tale of failure. While "Part 1" shows the rising arc of Guevara's career, culminating in the successful liberation of Cuba, "Part 2" shows the declining phase, ending in his ignominious execution in a cottage in Bolivia.

It's interesting to view the films as commentary on how to, and how not to, run a revolution. In Cuba, the revolutionaries, most of whom are Cuban (though not Guevara), are seen positively and supported by the oppressed population. In Bolivia, by contrast, the revolutionaries, none of whom are Bolivian, are viewed suspiciously by an indigenous population so downtrodden that it seems almost oblivious to its oppression. So while Cuba is ripe for revolution, Bolivia is barren soil for the revolutionaries.

However, as it is basically documenting the inevitable (from our future perspective) decline and loss of Guevara's small band, "Part 2" is a rather sombre affair, for which the end is well-known. That said, it's still compelling to watch. Del Toro's Guevara is still a magnetic, if brooding, presence, and much like "Part 1", the film is more like a documentary than a dramatisation in its presentation of biography. Apparently, Soderbergh was aiming for a film that showed what it was like to hang around with Guevara, and I can see that.

Again, what mostly comes over is Guevara's rather professional attitude to revolution; he's certainly single-minded. But he's also painted as unwaveringly even-handed with his fellow revolutionaries, and respectful of the civilians he encounters, for instance ensuring that they're paid for supplies he and his troops acquire. Although, admittedly, the screenplay is drawn from his own diaries, so might be a tad self-serving. As a result, the Che from this pair of films is a much less romantic, or perhaps less romanticised, figure than the wide-eyed young doctor of The Motorcycle Diaries. But this presentation of an older Guevara is (in my ignorant opinion) probably the more realistic one, and one that may cause less mouth-foaming indignation from his counter-revolutionary enemies.

Wednesday, 16 September 2009

Quarantine Mechanics

Perhaps I should have learnt from my most recent experience of him, but I was sufficiently intrigued by the backcover blurb that I couldn't resist checking out Quarantine by the Australian novelist Greg Egan.

The novel is set in the late 21st century, 33 years after the appearance of the Bubble, a strange, impenetrable barrier that isolates Earth's solar system from the surrounding space and which obscures the stars. While the physics, purpose and creators of the Bubble defy explanation, many ideas have been advanced for its appearance, and it has inspired violent religious cults that have rocked society with terrorist acts.

Nick Stavrianos is a former policeman, and a widower because of one cult's actions, now operates as a private detective in Australia. Originally because of his work, but now additionally because of his loss, he is augmented with mods, nanomachine-delivered modifications to his nervous system that manage all facets of his life, from those that permit direct technology interfacing to those that allow him to control his perception and moods. One mod, Karen, even creates a visual and auditory hallucination of his eponymous dead wife, one which advises and chastises him in equal measure.

Nick's latest case concerns the disappearance of a 32 year old patient from a secure facility for the mentally-handicapped. The woman, Laura, doesn't appear to fit the profile for a kidnapping victim, and is only missed by her surviving family because her vanishing may represent a financial reward for the facility's negligence. Nick's initial investigations uncover little beyond Laura's predisposition for brief periods of disappearance, but as he delves deeper he uncovers an electronic trail of evidence that points to her illegal transport to the north Australian city-province of New Hong Kong. Following this leads Nick to infiltrate the corporate headquarters of Biomedical Developments International, BDI, where he briefly encounters Laura before he himself is captured.

Waking up, he finds that his portfolio of mods has been extended with the addition of a loyalty mod, Sentinel, that makes him a willing slave of BDI. With his particular background, he's of use to them as a security guard in a project they're undertaking based on their analysis of Laura. Her ability to escape secure accommodation is just the tip of an iceberg of talent that BDI have reverse-engineered into a new mod, Ensemble, that breaks new ground in quantum mechanics (QM). By interfering with normal human brain function and preventing wavefunction collapse (via a version of "consciousness causes collapse"), the mod allows its user to "smear" their reality, such that they can choose the outcome of events from the wide array of possibilities presented by the quantum nature of reality. In this way, the user operates somewhat like a quantum computer in which the "correct answer" to a problem is found by sifting all of the possible subjective experiences of the user, and then collapsing the user's wavefunction so that only this one answer is made objectively real.

Though this all seems impossible at first to Nick, the demonstration of Ensemble's power by the researcher/test subject Po-kwai, convinces him of its reality. But its potential for misuse, and its possible connection to the Bubble, gradually forces him to act despite Sentinel.

The above description does something of a quantitative disservice to the novel. The conventional part of the novel, that bit prior to the arrival of QM, only makes up about a third of the book, while the crazy-ass, reality dysfunction of Ensemble requires the final two thirds of Philip K. Dick-esque mindfuckery. To be fair to Egan, his flavour of reality distortion is quite unlike that of PKD. The latter's seemed entirely drug-fuelled, and allowed his novels to forsake coherence and conventional narrative structure, instead replacing them with a heightened sense of paranoia and alienation. Which is why, for all of the clever ideas that sometimes underpin PKD's books, I can't really stand them. By contrast, Egan's deconstruction of reality is firmly rooted in one of the many interpretations of QM, and is both cleverly thought-through and logically coherent. Much to Egan's credit.

However, it makes for an extremely confusing and challenging read. I said something similar of the last of his novels that I read, but the problem here is of a much greater magnitude. In Schild's Ladder, the difficult bits could be skipped since they didn't prevent the reader from generally getting the jist of the story. Here, after an initially conventional science fiction backstory and opener, the novel goes off at the deep-end to such a degree that it's difficult to make head-or-tail of a large and significant chunk of what's going on. While Egan is pretty descriptive (generally in a good way), I don't think I really got to grips with Ensemble until I started this review and had to think about what it was I'd just read. None of which makes for a positive prognosis for most readers I'd imagine. Those with a better grip of QM will probably make better weather of it, but I found the ideas and descriptions so dense that, at times, they passed through me as if I was skim-reading the book.

Aside from the difficulty of hurdling a key plot device from the deeply non-intuitive world of QM, the delving into Ensemble gradually pushes the novel's early concerns for the Bubble and Laura far into the background. While there are late digressions to tackle both of these, Egan's attention has clearly switched to thinking through the implications of his QM conceit. By the end, I was pretty sure that Laura and the Bubble were connected (a fact that I had actually immediately grasped from their close ages), but the "smearing" of reality left things considerably more opaque than one would desire.

One of the odd things about Quarantine's jack-knife turn into the ultimate nature of reality, is that it sort-of undoes what's an otherwise interesting future that he's carved out. From the get-go the idea of the Bubble is a fantastic one, and one that Egan runs with for a while. The consequences, political, philosophical and theological, of the sudden imprisonment (or is it protection?) of humanity are all touched on, and I was genuinely surprised that Egan largely left them to twist in the wind. Similarly, in introducing mods to the reader, he opens the reader to the idea that subjective experience could be as easily modified as a computer's screensaver. The early descriptions of Nick's use of his mods are quite brilliant, from the controlled use of his old police mods to focus on the case, to the disruptive appearance of Karen and its subtext on his (mis)handling of his own grief. But all of these carefully constructed details feel somewhat sacrificed when Egan hits his QM-stride.

So, again, a mixed experience from Mr. Egan. Despite the difficulty navigating the deeply counter-intuitive core of the novel, and with Egan's increasing disinterest in the book's early plotting, it's hard not to be drawn in and impressed by just how far he pushes QM as a narrative device. Even if it does seem as if he ultimately lost his way in telling the tale. I'll be getting back to him at some point, I've no doubt, but I'll leave him be for a bit just to give my head a bit of a rest.

Sunday, 13 September 2009

One Night In Beastly

My erstwhile nitrification colleague, APM, is getting married. Hurrah. And while we're all too old for the dubiously sexist activities typically associated with stag nights, making something of a day of it was very much still an option. Unfortunately, my left wrist has been playing up again recently (a gardening injury; no, really), so I was forced to miss the day's main activities: quad bikes and dune buggies. However, I was able to join the party for an evening's dining and drinking in the much maligned (by me, mostly) town of Eastleigh. A surprisingly restrained and (unsurprisingly) enjoyable evening resulted, for which I took far too many photographs.

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